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ERX11052778: MinION sequencing
1 OXFORD_NANOPORE (MinION) run: 1.2M spots, 1.1G bases, 938.6Mb downloads

Submitted by: UNIVERSITY OF SZEGED
Study: Hypoxia and HIF-1 alpha promote lytic de novo KSHV infection
show Abstracthide Abstract
The impact of different stress conditions on the oncogenic Kaposi's sarcoma-associated herpesvirus (KSHV) primary infection that can occur in vivo remains largely unknown. We hypothesized that KSHV can establish latency or lytic cycle following de novo infection depending on the conditions of the cellular environment. Previous studies showed that hypoxia is a natural stress condition that promotes lytic reactivation and contributes to KSHV pathogenesis, but its effect on de novo KSHV infection is unknown. To test the effect of hypoxia on KSHV infection, we infected SLK cells in normoxia and hypoxia (1% O2), and performed a comparative analysis of viral gene expression, viral replication, and tested chromatinization of the KSHV genome during infection.
Sample: KSHV_H5
SAMEA113988697 • ERS15972578 • All experiments • All runs
Library:
Name: KSHV_ONT_dcDNA_H5
Instrument: MinION
Strategy: RNA-Seq
Source: VIRAL RNA
Selection: Oligo-dT
Layout: SINGLE
Construction protocol: SQK-DCS109
Runs: 1 run, 1.2M spots, 1.1G bases, 938.6Mb
Run# of Spots# of BasesSizePublished
ERR116509621,164,1721.1G938.6Mb2023-10-18

ID:
30082477

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